Scientists publish unique genomic discoveries with SMRT

A new paper released in Nature today reported the virtually complete draft genome of Oropetium thomaeum, a grass species that can regrow after exposed to extreme drought when water becomes available.

The plant's 245 Mb genome was analyzed with 72x coverage on the PacBio RS II sequencing system by Donald Danforth Plant Science Center researchers and collaborators. The resulting assembly has an accuracy of 99.99995% and includes telomere and centromere sequences, long terminal repeat retrotransposons, tandem duplicated genes, and other difficult-to-assemble genomic elements.

This plant was sequenced through Pacific Biosciences' "Most Interesting Genome in the World" grant program to help scientists determine the biological mechanisms behind its extreme drought tolerance for potential application in crop improvement. "We submitted the idea to sequence the resurrection grass Oropetium thomaeum to PacBio because it has the smallest known genome among the grasses, " said senior author Todd Mockler.

This hearty grass is called a resurrection plant due to its ability to survive in desert-like conditions; even though it looks lifeless, it still has less than a third of its original water content. The tiny C4 grass, which grows on rock outcrops in parts of Africa and India, is closely related to major food, feed and bioenergy crops and can be revived with a small amount of water, resuming growth. The Oropetium genome sequence will contribute to understanding of novel drought tolerance mechanisms for efficient and productive agricultural land use.